Q. Hanafee and shafee salaah times are different. What do I do when I am in Haramain-ash-shareefain?
A. When you perform salaah in the Haram, then follow the imaam of the Haram. When you are alone, then you have to follow what your Madhab calls for you to follow — whether you’re Hanafee, Shafee, Maliki, Manbali, etc. (From your question, are you merely assuming that imams of the haram are Shafee? Never assume my friend.)
Allah certainly knows best.